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1

Learning genetic epistasis using Bayesian network scoring criteria

Xia Jiang, Richard E Neapolitan, M Michael Barmada, Shyam Visweswaran

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 436 KB

english, 2011

2

Parental attitudes toward newborn screening for Duchenne/Becker muscular dystrophy and spinal muscular atrophy

Wood, Molly F., Hughes, Sarah C., Hache, Lauren P., Naylor, Edwin W., Abdel-Hamid, Hoda Z., Barmada, M. Michael, Dobrowolski, Steven F., Stickler, David E., Clemens, Paula R.

Journal:

Year:

2014

Language:

english

File:

PDF, 106 KB

english, 2014

3

Pooling-Based Genome-Wide Association Study Implicates Gamma-Glutamyltransferase 1 (GGT1) Gene in Pancreatic Carcinogenesis

Diergaarde, Brenda, Brand, Randall, Lamb, Janette, Cheong, Soo Yeon, Stello, Kim, Barmada, M. Michael, Feingold, Eleanor, Whitcomb, David C.

Journal:

Year:

2010

Language:

english

File:

PDF, 319 KB

english, 2010

4

Autophagy induction enhances TDP43 turnover and survival in neuronal ALS models

Barmada, Sami J, Serio, Andrea, Arjun, Arpana, Bilican, Bilada, Daub, Aaron, Ando, D Michael, Tsvetkov, Andrey, Pleiss, Michael, Li, Xingli, Peisach, Daniel, Shaw, Christopher, Chandran, Siddharthan,

Journal:

Nature Chemical Biology

Year:

2014

Language:

english

File:

PDF, 1.81 MB

english, 2014

5

Identifying genetic interactions in genome-wide data using Bayesian networks

Xia Jiang, M. Michael Barmada, Shyam Visweswaran

Journal:

Genetic Epidemiology

Year:

2010

Language:

english

File:

PDF, 110 KB

english, 2010

6

Analysis of tumor necrosis factor-α, transforming growth factor-β1, interleukin-10, and interferon-γ polymorphisms in patients with alcoholic chronic pancreatitis

Alexander Schneider, M.Michael Barmada, Adam Slivka, John A. Martin, David C. Whitcomb

Journal:

Year:

2004

Language:

english

File:

PDF, 195 KB

english, 2004

7

Stability of exploratory multivariate data modeling in longitudinal data

Haydar Sengul, M Michael Barmada

Journal:

Year:

2003

Language:

english

File:

PDF, 464 KB

english, 2003

8

Genome-wide homozygosity mapping localizes a gene for autosomal recessive non-progressive infantile ataxia to 20q11-q13

Lisbeth Tranebjaerg, Tanya M. Teslovich, MaryPat Jones, M. Michael Barmada, Toril Fagerheim, Arve Dahl, Diana M. Escolar, Jeffrey M. Trent, Elizabeth M. Gillanders, Dietrich A. Stephan

Journal:

Year:

2003

Language:

english

File:

PDF, 471 KB

english, 2003

9

Genetic analysis of the glutathione s-transferase genesMGST1,GSTM3,GSTT1, andGSTM1in patients with hereditary pancreatitis

Alexander Schneider, Sandra Tögel, M. Michael Barmada, David C. Whitcomb

Journal:

Journal of Gastroenterology

Year:

2004

Language:

english

File:

PDF, 175 KB

english, 2004

10

The Serotonin Transporter: Sequence Variation inMacaca fascicularisand its Relationship to Dominance

Cassandra M. Miller-Butterworth, Jay R. Kaplan, M. Michael Barmada, Stephen B. Manuck, Robert E. Ferrell

Journal:

Behavior Genetics

Year:

2007

Language:

english

File:

PDF, 651 KB

english, 2007

11

Evaluating Disorders with a Complex Genetics Basis. The Future Roles of Meta-analysis and Systems Biology

David C. Whitcomb, Elie Aoun, Yoram Vodovotz, Gilles Clermont, M. Michael Barmada

Journal:

Digestive Diseases and Sciences

Year:

2005

Language:

english

File:

PDF, 296 KB

english, 2005

12

A Novel Locus for Familial Migraine on Xp22

Thomas Wieser, Julio Pascual, Agusto Oterino, Michael Soso, Michael Barmada, Kathy L. Gardner

Journal:

Headache: The Journal of Head and Face Pain

Year:

2010

Language:

english

File:

PDF, 279 KB

english, 2010

13

Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease

Barrett, Jeffrey C, Hansoul, Sarah, Nicolae, Dan L, Cho, Judy H, Duerr, Richard H, Rioux, John D, Brant, Steven R, Silverberg, Mark S, Taylor, Kent D, Barmada, M Michael

Journal:

Nature Genetics

Year:

2008

Language:

english

File:

PDF, 704 KB

english, 2008

14

Genome-wide association study identifies new susceptibility loci for Crohn disease and implicates autophagy in disease pathogenesis

Rioux, John D, Xavier, Ramnik J, Taylor, Kent D, Silverberg, Mark S, Goyette, Philippe, Huett, Alan, Green, Todd, Kuballa, Petric, Barmada, M Michael, Datta, Lisa Wu

Journal:

Nature Genetics

Year:

2007

Language:

english

File:

PDF, 543 KB

english, 2007

15

A novel missense mutation in ACTG1 causes dominant deafness in a Norwegian DFNA20/26 family, but ACTG1 mutations are not frequent among families with hereditary hearing impairment

Rendtorff, Nanna D, Zhu, Mei, Fagerheim, Toril, Antal, Torben L, Jones, MaryPat, Teslovich, Tanya M, Gillanders, Elizabeth M, Barmada, Michael, Teig, Erik, Trent, Jeffrey M

Journal:

European Journal of Human Genetics

Year:

2006

Language:

english

File:

PDF, 226 KB

english, 2006

16

A genome scan in 260 inflammatory bowel disease-affected relative pairs

M. Michael Barmada, Steven R. Brant, Dan L. Nicolae, Jean-Paul Achkar, Carolien I. Panhuysen, Theodore M. Bayless, Judy H. Cho, Richard H. Duerr

Journal:

Inflammatory Bowel Diseases

Year:

2004

Language:

english

File:

PDF, 404 KB

english, 2004

17

A genome scan in 260 inflammatory bowel disease-affected relative pairs

M. Michael Barmada, Steven R. Brant, Dan L. Nicolae, Jean-Paul Achkar, Carolien I. Panhuysen, Theodore M. Bayless, Judy H. Cho, Richard H. Duerr

Journal:

Inflammatory Bowel Diseases

Year:

2004

Language:

english

File:

PDF, 832 KB

english, 2004

18

The IBD international genetics consortium provides further evidence for linkage to IBD4 and shows gene-environment interaction

Marie Pierik, Huiying Yang, Michael M. Barmada, Juleen A. Cavanaugh, Vito Annese, Steven R. Brant, Judy H. Cho, Richard H. Duerr, Jean-Pierre Hugot, Dermot P. McGovern, Paulina Paavola-Sakki, Graham L

Journal:

Inflammatory Bowel Diseases

Year:

2005

Language:

english

File:

PDF, 411 KB

english, 2005

19

Investigation of oxidized LDL-receptor

Luedecking-Zimmer, Erin, DeKosky, Steven, Chen, Qi, Barmada, Michael, Kamboh, Ilyas

Journal:

Year:

2002

Language:

english

File:

PDF, 204 KB

english, 2002

20

Variation in the FABP2 promoter alters transcriptional activity and is associated with body composition and plasma lipid levels

Coleen M. Damcott,Eleanor Feingold,Susan P. Moffett,M. Michael Barmada…

Journal:

Year:

2003

Language:

english

File:

PDF, 447 KB

english, 2003

21

Whole Genome Association Identifies Novel Susceptibility Genes for Crohn's Disease and Implicates a Crucial Role for Autophagy

John Rioux, Ramnik Xavier, Kent Taylor, Philippe Goyette, Mark Silverberg, Alan Huett, Todd Green, Petric Kuballa, Michael Barmada, Lisa Datta, Yin Yao Shugart, Edmond Jean Bernard, Ling Mei, Dan Nico

Journal:

Clinical Immunology

Year:

2007

Language:

english

File:

PDF, 39 KB

english, 2007

22

“Predicting” parental longevity from offspring endophenotypes: Data from the Long Life Family Study (LLFS)

Anatoli I. Yashin, Konstantin G. Arbeev, Alexander Kulminski, Ingrid Borecki, Kaare Christensen, Michael Barmada, Evan Hadley, Winifred Rossi, Joseph H. Lee, Rong Cheng, Irma T. Elo

Journal:

Mechanisms of Ageing and Development

Year:

2010

Language:

english

File:

PDF, 171 KB

english, 2010

23

Prostaglandin E2 and IL-23 plus IL-1β Differentially Regulate the Th1/Th17 Immune Response of Human CD161+CD4+ Memory T Cells

Arthur Barrie, Anupriya Khare, Matthew Henkel, Yingze Zhang, M. Michael Barmada, Richard Duerr, Anuradha Ray

Journal:

Clinical and Translational Science

Year:

2011

Language:

english

File:

PDF, 878 KB

english, 2011

24

A Gene for Autosomal Dominant Congenital Nystagmus Localizes to 6p12

John B. Kerrison, Véronique J. Arnould, M.Michael Barmada, Robert K. Koenekoop, Barbara J. Schmeckpeper, Irene H. Maumenee

Journal:

Year:

1996

Language:

english

File:

PDF, 99 KB

english, 1996

25

Physical Activity Levels in American-Indian Adults: The Strong Heart Family Study

Kristi L. Storti, Vincent C. Arena, M. Michael Barmada, Clareann H. Bunker, Robert L. Hanson, Sandra L. Laston, Jeun-Liang Yeh, Joseph M. Zmuda, Barbara V. Howard, Andrea M. Kriska

Journal:

American Journal of Preventive Medicine

Year:

2009

Language:

english

File:

PDF, 385 KB

english, 2009

26

Genetic variation in uncoupling protein 3 is associated with dietary intake and body composition in females

Coleen M Damcott, Eleanor Feingold, Susan P Moffett, M.Michael Barmada, Julie A Marshall, Richard F Hamman, Robert E Ferrell

Journal:

Year:

2004

Language:

english

File:

PDF, 122 KB

english, 2004

27

Genetic variation in fatty acid-binding protein-4 and peroxisome proliferator-activated receptor γ interactively influence insulin sensitivity and body composition in males

Coleen M Damcott, Susan P Moffett, Eleanor Feingold, M.Michael Barmada, Julie A Marshall, Richard F Hamman, Robert E Ferrell

Journal:

Year:

2004

Language:

english

File:

PDF, 148 KB

english, 2004

28

Association of CLU and PICALM variants with Alzheimer's disease

M. Ilyas Kamboh, Ryan L. Minster, F. Yesim Demirci, Mary Ganguli, Steven T. DeKosky, Oscar L. Lopez, M. Michael Barmada

Journal:

Neurobiology of Aging

Year:

2012

Language:

english

File:

PDF, 372 KB

english, 2012

29

Linkage and Association between Inflammatory Bowel Disease and a Locus on Chromosome 12

Richard H. Duerr, M. Michael Barmada, Leilei Zhang, Sean Davis, Robert A. Preston, Lara J. Chensny, Jody L. Brown, Garth D. Ehrlich, Daniel E. Weeks, Christopher E. Aston

Journal:

The American Journal of Human Genetics

Year:

1998

Language:

english

File:

PDF, 92 KB

english, 1998

30

Congenital Motor Nystagmus Linked to Xq26-q27

John B. Kerrison, M. Reza Vagefi, M. Michael Barmada, Irene H. Maumenee

Journal:

The American Journal of Human Genetics

Year:

1999

Language:

english

File:

PDF, 1.37 MB

english, 1999

31

High-Density Genome Scan in Crohn Disease Shows Confirmed Linkage to Chromosome 14q11-12

Richard H. Duerr, M. Michael Barmada, Leilei Zhang, Roland Pfützer, Daniel E. Weeks

Journal:

The American Journal of Human Genetics

Year:

2000

Language:

english

File:

PDF, 96 KB

english, 2000

32

The IBD2 Locus Shows Linkage Heterogeneity between Ulcerative Colitis and Crohn Disease

Miles Parkes, M. Michael Barmada, Jack Satsangi, Daniel E. Weeks, Derek P. Jewell, Richard H. Duerr

Journal:

The American Journal of Human Genetics

Year:

2000

Language:

english

File:

PDF, 296 KB

english, 2000

33

African American Hypertensive Nephropathy Maps to a New Locus on Chromosome 9q31-q32

Ki Wha Chung, Robert E. Ferrell, Demetrius Ellis, Michael Barmada, Michael Moritz, David N. Finegold, Ronald Jaffe, Abhay Vats

Journal:

The American Journal of Human Genetics

Year:

2003

Language:

english

File:

PDF, 3.01 MB

english, 2003

34

Genome-Wide Association Study for Alzheimer’s Disease with Psychotic Symptoms

Paul Hollingworth, Robert Sweet, Rebecca Sims, Denise Harold, Richard Abraham, Amy Gerrish, Bernie Devlin, Lambertus Klei, Michael Barmada, Yesim Demirci, Steven DeKosky, Oscar Lopez, Peter Passmore,

Journal:

Alzheimer's & Dementia

Year:

2011

Language:

english

File:

PDF, 58 KB

english, 2011

35

African ancestry and lung function in Puerto Rican children

Brehm, John M., Acosta-Pérez, Edna, Klei, Lambertus, Roeder, Kathryn, Barmada, Michael M., Boutaoui, Nadia, Forno, Erick, Cloutier, Michelle M., Datta, Soma, Kelly, Roxanne, Paul, Kathryn, Sylvia, Jod

Journal:

Journal of Allergy and Clinical Immunology

Year:

2012

Language:

english

File:

PDF, 230 KB

english, 2012

36

The C161→T polymorphism in peroxisome proliferator–activated receptor gamma, but not P12A, is associated with insulin resistance in Hispanic and non-Hispanic white women: evidence for another functional variant in peroxisome proliferator–activated receptor gamma

Susan P. Moffett, Eleanor Feingold, M. Michael Barmada, Coleen M. Damcott, Julie A. Marshall, Richard F. Hamman, Robert E. Ferrell

Journal:

Year:

2005

Language:

english

File:

PDF, 108 KB

english, 2005

37

Association of the peroxisome proliferator–activated receptor γ gene with type 2 diabetes mellitus varies by physical activity among non-Hispanic whites from Colorado

Tracy L. Nelson, Tasha E. Fingerlin, Laurie K. Moss, M. Michael Barmada, Robert E. Ferrell, Jill M. Norris

Journal:

Year:

2007

Language:

english

File:

PDF, 133 KB

english, 2007

38

Perinuclear neutrophil antibodies are not markers for genetic susceptibility or indicators of genetic heterogeneity in familial ulcerative colitis

Jean-Paul Achkar, M.Michael Barmada, Richard H Duerr

Journal:

American Journal of Gastroenterology

Year:

2002

Language:

english

File:

PDF, 146 KB

english, 2002

39

Autosomal dominant infantile gastroesophageal reflux disease: exclusion of a 13q14 locus in five well characterized families

Susan R Orenstein, Theresa M Shalaby, Robert Finch, Roland H Pfuetzer, Suzanne DeVandry, Lara J Chensny, M.Michael Barmada, David C Whitcomb

Journal:

American Journal of Gastroenterology

Year:

2002

Language:

english

File:

PDF, 171 KB

english, 2002

40

Reply

Roland H. Pfützer, M.Michael Barmada, David C. Whitcomb

Journal:

Gastroenterology

Year:

2001

Language:

english

File:

PDF, 142 KB

english, 2001

41

SPINK 1 mutations modify phenotypic expression in hereditary pancreatitis (HP) caused by cationic trypsinogen (PRSS1) mutations R122H and N291

Roland H. Pfuetzer, Robert Finch, Suzanne E. Shapiro, M Michael Barmada, Erica S. Myers, Lara J. Chensny, David C. Whitcomb

Journal:

Gastroenterology

Year:

2001

Language:

english

File:

PDF, 189 KB

english, 2001

42

Transmission/disequilibrium test analysis of a genome scan dataset detects a novel, significant inflammatory bowel disease linkage to chromosome 3p

Richard H. Duerr, M Michael Barmada, Leilei Zhang, Michael E. Ford, July H. Cho, Steven R. Brant, Jean-Paul Achkar, Robert N. Baldassano, Daniel E. Weeks

Journal:

Gastroenterology

Year:

2001

Language:

english

File:

PDF, 197 KB

english, 2001

43

475o Resistin, a Potent Adipokine, is Associated With Acute Pancreatitis: Assessment of Functional Genetic Polymorphisms and Serum Levels

Venkata Muddana, Anna C. Evans, Christopher J. Langmead, Gilles Clermont, Michael M. Barmada, Georgios I. Papachristou, David C. Whitcomb

Journal:

Gastroenterology

Year:

2010

Language:

english

File:

PDF, 49 KB

english, 2010

44

SPINK1/PSTI mutations are associated with tropical pancreatitis and type II diabetes mellitus in Bangladesh

Alexander Schneider, Amitabh Suman, Livio Rossi, M.Michael Barmada, Christoph Beglinger, Shahana Parvin, Soheli Sattar, Liaquat Ali, A.K.Azad Khan, Niklaus Gyr, David C. Whitcomb

Journal:

Gastroenterology

Year:

2002

Language:

english

File:

PDF, 83 KB

english, 2002

45

Genetic Variants in Major Histocompatibility Complex-Linked Genes Associate With Pediatric Liver Transplant Rejection

Rakesh Sindhi, Brandon W. Higgs, Daniel E. Weeks, Chethan AshokKumar, Ronald Jaffe, Cecilia Kim, Patrick Wilson, Nydia Chien, Joseph Glessner, Anjan Talukdar, George Mazariegos, M. Michael Barmada, Ed

Journal:

Gastroenterology

Year:

2008

Language:

english

File:

PDF, 2.52 MB

english, 2008

46

Vitamin D Insufficiency and Severe Asthma Exacerbations in Puerto Rican Children

Brehm, John M., Acosta-Pérez, Edna, Klei, Lambertus, Roeder, Kathryn, Barmada, Michael, Boutaoui, Nadia, Forno, Erick, Kelly, Roxanne, Paul, Kathryn, Sylvia, Jody, Litonjua, Augusto A., Cabana, Michae

Journal:

American Journal of Respiratory and Critical Care Medicine

Year:

2012

Language:

english

File:

PDF, 110 KB

english, 2012

47

Proteostasis of polyglutamine varies among neurons and predicts neurodegeneration

Tsvetkov, Andrey S, Arrasate, Montserrat, Barmada, Sami, Ando, D Michael, Sharma, Punita, Shaby, Benjamin A, Finkbeiner, Steven

Journal:

Nature Chemical Biology

Year:

2013

Language:

english

File:

PDF, 1.05 MB

english, 2013

48

Does the pain-protective GTP cyclohydrolase haplotype significantly alter the pattern or severity of pain in humans with chronic pancreatitis?

Mark Lazarev, Janette Lamb, M Michael Barmada, Feng Dai…

Journal:

Year:

2008

Language:

english

File:

PDF, 522 KB

english, 2008

49

Genetic variants within the MHC region are associated with immune responsiveness to childhood vaccinations

Yucesoy, Berran, Talzhanov, Yerkebulan, Johnson, Victor J., Wilson, Nevin W., Biagini, Raymond E., Wang, Wei, Frye, Bonnie, Weissman, David N., Germolec, Dori R., Luster, Michael I., Barmada, Michael

Journal:

Year:

2013

Language:

english

File:

PDF, 330 KB

english, 2013

50

Complex changes in the liver mitochondrial proteome of short chain acyl-CoA dehydrogenase deficient mice

Wang, Wei, Mohsen, Al-Walid, Uechi, Guy, Schreiber, Emanuel, Balasubramani, Manimalha, Day, Billy, Michael Barmada, M., Vockley, Jerry

Journal:

Molecular Genetics and Metabolism

Year:

2014

Language:

english

File:

PDF, 932 KB

english, 2014

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